Research Pages

Collaborators

Serafim Batzoglou, Associate Professor, Computer Science Department, Stanford University The SFB group has been working with Prof. Serafim Batzoglou on genome-wide association studies. http://stanford.edu/group/biox/clark/batzoglou David Dill, Professor, Computer Science Department, Stanford University The SFB group has been working with Prof. David Dill on genome-wide association studies. https://profiles.stanford.edu/david-dill Jianhua Huang, Professor, Department of Statistics, Texas A&M The SFB group has been working with Prof. Jianhua Huang on protein structure sampling and non-negative

Current Research

Research Grants

Protein loop structure determination through NMR data

Research Images

NMR structure determination Automating Nuclear Magnetic Resonance (NMR) protein structure determination Modeling biological systems Model, analyze, and control complex biological and biochemical systems Modeling biological systems Model, analyze, and control complex biological and biochemical systems Figure3aR

Software

Open-source tools, libraries, services, and ontologies maintained by the Bio-Ontology Research Group. Source is on github.com/bio-ontology-research-group. Ontology Embedding & Machine Learning Libraries and methods that turn ontologies into vector representations or otherwise combine logical structure with statistical learning. mOWL Python library for machine learning with biomedical ontologies. Unifies projection-, axiom- and geometric-embedding methods (EL Embeddings, ELBE, BoxSquaredEL, OWL2Vec*, DL2Vec, OPA2Vec) behind one API, with first-class OWLAPI access and PyTorch integration. From